Top Houston County Hotels: 2026 Best Hotels in Houston County

Top Cities in Houston County

A field of tall, golden grasses with a lake and distant mountains in the background.

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Our top choices for Houston County hotels

A modern living room with a fireplace, leather sofas, a coffee table, and a patterned rug.

1. Best Western Plus LaCrescent / LaCrosse

La Crescent

Leanne

$89 nightly

Oct 4 - Oct 5

Total with taxes and fees

A display of ceramic mugs and bowls on a table with a white tablecloth, illuminated by string lights.

2. The Rushford Inn

Rushford

sonja

$159 nightly

Oct 4 - Oct 5

Total with taxes and fees

A hotel room with two beds, a nightstand, and two wall-mounted lamps.

3. The Sawmill Inn

Houston

Josie

$159 nightly

Sep 30 - Oct 1

Total with taxes and fees

A kitchen with a large island, wooden walls, and pendant lighting.

4. Warm and Cozy Upstairs Apartment

Caledonia

Heidi P.

$153 nightly

Oct 4 - Oct 5

Total with taxes and fees

A modern kitchen with a large island, bar stools, a sink, and a trash bin.

5. Small Town Vibe

Caledonia

Mark R.

A bedroom with a bed, bedside table, lamp, and a view of the adjacent room through a wooden-framed door.

6. Spacious 2-bedroom loft above the International Owl Center in Houston, MN

Houston

Nikki W.

$285 nightly

Oct 1 - Oct 2

Total with taxes and fees

A greenhouse with a wooden table and benches, surrounded by various potted plants and flowers.

7. Country Retreat Nestled in Wooded Valley

Spring Grove

Tim C.

A cozy room with wooden walls, a ceiling fan, wicker chairs, a small table, and large windows with blinds.

8. Cozy 4 bedroom relax atmosphere enjoy beauty of bluff country driftless region

Houston

Bryan W.

A log cabin interior with a wooden floor, a sofa, a chair, a small table, and a window.

9. Country Cozy Cabin, Houston, MN

Houston

Cannin M.

A modern kitchen with a central island, bar stools, a stainless steel sink, and a microwave.

10. Small Town Cozy Getaway

Caledonia

Beth T.

A single-story mobile home with a wooden deck and a small porch.

11. Cozy Oak Street Cottage

Mabel

Patti C.

$160 nightly

Sep 30 - Oct 1

Total with taxes and fees

A spacious living room with a stone fireplace, a brown leather sofa, and a blue coffee table.

12. 3 Peaks Farmhouse- Beautiful Remodel with Scenic Views + Root River Trail access

Houston

Chris V.

A spacious living room with a brown sofa, a round coffee table, and a patterned rug. There is a ceiling fan, a dining area with chairs, and a staircase leading to another level.

13. Hokah Ohana House: Historic charm, Modern updates

Hokah

Dia F.

$170 nightly

Sep 30 - Oct 1

Total with taxes and fees

A spacious living room with a large window, a dining area, and a kitchen with a granite countertop.

14. Auggie's home in Mississippi

Brownsville

Tim H.

A gazebo with a metal roof and a table surrounded by chairs, overlooking a scenic landscape with trees and hills.

15. Studio apartment overlooking the beautiful Mississippi River

Brownsville

Damien

A cozy log cabin room with a white leather sofa, a small wooden stool, and a green chest of drawers.

16. Peaceful historic cabin on 380 acres.

Caledonia

Joseph B.

A hotel room with two beds, a ceiling light, a framed picture on the wall, and a window with curtains.

17. Authentic Brownsville Farmhouse: 1 Mi to River!

Brownsville

A wooden staircase leading to a living area with a leather sofa, a television, and a view of the outdoors.

18. Private 5-bedroom farmhouse with AC in Rural Houston

Houston

Mike T.

A bedroom with a bed, a window, a ceiling fan, and a nightstand with a lamp.

19. Mississippi River view. Duck Hunters Get away. 4 Bedroom, 5 bed - Sleeps 10.

Brownsville

"This place was the best I have ever stayed. First of all very tidy and clean rooms and bathrooms with enough space for big groups .Me and all of my other friends really enjoyed and had great time together. The location with amazing views of lake Mississippi and pleasant valley from balcony is beautiful. The property had most of the amities ,kitchen,fireplace, beautiful deck with grill, board games many more including jacuzzi for the group. We had great memories and recommend 10/10 for any...

Alkaraj T.

20. Authentic Brownsville Farmhouse: 1 Mi to River!

Brownsville

Chy L.

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Top Houston County Hotel Reviews

Gundersen Hotel & Suites

10/10 Excellent

"Fantastic place! I'd come back again next time I'm in the area; the hotel is super nice!"

Holiday Inn Express & Suites Onalaska La Crosse Area by IHG

10/10 Excellent

"The hotel itself is beautiful and very clean, and the staff were friendly and helpful. My main concern was the strong fragrance being pumped into the hotel. The scent was extremely overwhelming for me and my boyfriend. Unlike many hotels where fragrance is limited to the lobby, this hotel had multiple fragrance dispensers in the hallway corridors as well. The fragrance was so strong that my boyfriend sometimes held his shirt over his face when we had to walk through the hallway. I am also sensitive to strong fragrances, and the scent was uncomfortable for me. I brought this concern to the hotel’s attention, and they kindly agreed to turn off the fragrance dispensers in the hallway corridors during my stay. That evening, the hallway did seem noticeably less overwhelming when we returned to our room. However, the following morning, the strong fragrance was back and was immediately noticeable when we stepped into the hallway. I understand that scent is part of the hotel’s branding, but I would encourage the hotel to reconsider how strongly fragrance is used, particularly in hallway corridors. Guests should have the option of staying in an environment without a strong artificial scent. Aside from the fragrance issue, we had a positive experience with the cleanliness of the hotel and the friendliness of the staff."

AmericInn by Wyndham La Crosse Riverfront-Conference Center

10/10 Excellent

"The property as a whole was great! Plenty of parking, the rooms were clean and updated. The pool and hottub were well kept and clean as well! The outdoor tikibar is beautiful! Lots of room around thr bar. The property is right off the river and the views are wonderful! Plenty of seating along the river in well kept soft sand. The staff is polite, friendly and helpful! Highly recommend this location!"

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Top Cities in Houston County

La Crescent

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Our top choices for Houston County hotels

1. Best Western Plus LaCrescent / LaCrosse

2. The Rushford Inn

3. The Sawmill Inn

4. Warm and Cozy Upstairs Apartment

5. Small Town Vibe

6. Spacious 2-bedroom loft above the International Owl Center in Houston, MN

7. Country Retreat Nestled in Wooded Valley

8. Cozy 4 bedroom relax atmosphere enjoy beauty of bluff country driftless region

9. Country Cozy Cabin, Houston, MN

10. Small Town Cozy Getaway

11. Cozy Oak Street Cottage

12. 3 Peaks Farmhouse- Beautiful Remodel with Scenic Views + Root River Trail access

13. Hokah Ohana House: Historic charm, Modern updates

14. Auggie's home in Mississippi

15. Studio apartment overlooking the beautiful Mississippi River

16. Peaceful historic cabin on 380 acres.

17. Authentic Brownsville Farmhouse: 1 Mi to River!

18. Private 5-bedroom farmhouse with AC in Rural Houston

19. Mississippi River view. Duck Hunters Get away. 4 Bedroom, 5 bed - Sleeps 10.

20. Authentic Brownsville Farmhouse: 1 Mi to River!

Top Houston County Hotel Reviews

Gundersen Hotel & Suites

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